Class SAMRecordAndReferenceMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase, HKEY extends Comparable>
java.lang.Object
picard.metrics.MultiLevelCollector<BEAN, HKEY, SAMRecordAndReference>
picard.metrics.SAMRecordAndReferenceMultiLevelCollector<BEAN,HKEY>
- Direct Known Subclasses:
AlignmentSummaryMetricsCollector, RrbsMetricsCollector
public abstract class SAMRecordAndReferenceMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase, HKEY extends Comparable>
extends MultiLevelCollector<BEAN, HKEY, SAMRecordAndReference>
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Field Summary
Fields inherited from class MultiLevelCollector
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected SAMRecordAndReferencemakeArg(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq) Methods inherited from class MultiLevelCollector
acceptRecord, addAllLevelsToFile, finish, getAllReadsCollector, makeAllReadCollector, makeChildCollector, makeLibraryCollector, makeReadGroupCollector, makeSampleCollector, setup
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Constructor Details
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SAMRecordAndReferenceMultiLevelCollector
public SAMRecordAndReferenceMultiLevelCollector()
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Method Details
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makeArg
protected SAMRecordAndReference makeArg(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq) - Specified by:
makeArgin classMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase, HKEY extends Comparable, SAMRecordAndReference>
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